PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648145.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 223aa    MW: 25294.5 Da    PI: 5.6904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648145.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.7e-053877555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  +ErrRR+++ +++ +Lr l+            Ka+i+e A+ YI++Lq
  XP_016648145.1 38 NLHAERRRRQKLSERLLTLRALMN-----------KATIVEDAITYIHELQ 77
                    5579****************9975...........559***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-113090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-73192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-93180No hitNo description
PROSITE profilePS508889.1723386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-53982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEFVASSLDE LCITEQGKRG GRMGHRSHNN DDEYKSKNLH AERRRRQKLS ERLLTLRALM  60
NKATIVEDAI TYIHELQKTV NILKDQLFDM EASEEEAPEQ KKEEIQAAEE MKKFGIQAEV  120
NVTQIGGNKL WVKAILEKKR GGFTKLMEAM TAFGFELTDT SVTTSNGAML VSSCVMVSHR  180
KSTTLLNXAH EININSNDFQ GSYCETLEVE QTKELMLEII NST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225011.11e-138PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1
TrEMBLM5WJT89e-92M5WJT8_PRUPE; Uncharacterized protein (Fragment)
STRINGGLYMA15G06950.26e-54(Glycine max)
STRINGPGSC0003DMT4000559101e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-33bHLH family protein